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PROSITE entry PS51432


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS51432
Entry name [info] AP_NUCLEASE_F2_4
Accession [info] PS51432
Entry type [info] MATRIX
Date [info] 01-FEB-2009 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00599
Associated ProRule [info] PRU00763

Name and characterization of the entry

Description [info] AP endonucleases family 2 profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=280;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=275;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.0610318; R2=0.0083728; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=71340.0000000; R2=0.0000000; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=3218; H_SCORE=71340; N_SCORE=29.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=531; H_SCORE=71340; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-19; D=-100; I=-100; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 278 in 278 different sequences
Number of true positive hits 278 in 278 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] window20
Author [info] PS_Langendijk_Genevaux
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
278 sequences

APE_ASFB7   (Q65202), APE_ASFK5   (P0C9C8), APE_ASFM2   (Q65246), 
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PDB
[Detailed view]
17 PDB

1QTW; 1QUM; 1XP3; 2NQ9; 2NQH; 2NQJ; 2X7V; 2X7W; 3AAL; 4HNO; 4K1G; 5ZHZ;
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