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PROSITE entry PS50984


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50984
Entry name [info] TRUD
Accession [info] PS50984
Entry type [info] MATRIX
Date [info] 01-MAY-2004 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50984
Associated ProRule [info] PRU00342

Name and characterization of the entry

Description [info] TRUD domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=222;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=217;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3643713; R2=0.0156066; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=10790.5595703; R2=8.3769846; PRIORITY=1; TEXT='Heuristic 0.1%';
/CUT_OFF: LEVEL=0; SCORE=394; H_SCORE=14091; N_SCORE=8.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=265; H_SCORE=13010; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-7; D=-100; I=-100; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_01 which contains 572'970 sequence entries.


Total number of hits 202 in 202 different sequences
Number of true positive hits 202 in 202 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] TRUD
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
202 sequences

PUS7L_DANRE (Q1L8I0), PUS7L_HUMAN (Q9H0K6), PUS7L_MOUSE (Q8CE46), 
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PDB
[Detailed view]
6 PDB

1SB7; 1SI7; 1SZW; 1Z2Z; 5KKP; 7MZV